Publications

Griffin Adams, Emily Alsentzer, Mert Ketenci, Jason Zucker, Noémie Elhadad (2021). What's in a Summary? Laying the Groundwork for Advances in Hospital-Course Summarization. arXiv preprint arXiv:2105.00816.

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Emily Alsentzer, Samuel Finlayson, Michelle Li, Marinka Zitnik (2020). Subgraph Neural Networks. Advances in Neural Information Processing Systems.

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Emily Alsentzer, Matthew McDermott, Fabian Falck, Suproteem K Sarkar, Subhrajit Roy, Stephanie L Hyland (2020). ML4H Abstract Track 2020. arXiv e-prints.

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Matthew McDermott, Emily Alsentzer, Sam Finlayson, Michael Oberst, Fabian Falck, Tristan Naumann, Brett K Beaulieu-Jones, Adrian V Dalca (2020). ML4H Abstract Track 2019. arXiv preprint arXiv:2002.01584.

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Suproteem K Sarkar, Subhrajit Roy, Emily Alsentzer, Matthew BA McDermott, Fabian Falck, Ioana Bica, Griffin Adams, Stephen Pfohl, Stephanie L Hyland (2020). Machine Learning for Health (ML4H) 2020: Advancing Healthcare for All. Machine Learning for Health.

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Adrian V Dalca, Matthew BA McDermott, Emily Alsentzer, Samuel G Finlayson, Michael Oberst, Fabian Falck, Corey Chivers, Andrew Beam, Tristan Naumann, Brett Beaulieu-Jones (2020). Machine Learning for Health (ML4H) 2019: What Makes Machine Learning in Medicine Different?. Machine Learning for Health Workshop.

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Irene Y Chen, Emily Alsentzer, Hyesun Park, Richard Thomas, Babina Gosangi, Rahul Gujrathi, Bharti Khurana (2020). Intimate partner violence and injury prediction from radiology reports. BIOCOMPUTING 2021: Proceedings of the Pacific Symposium.

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William Boag, Tzu-Ming Harry Hsu, Matthew McDermott, Gabriela Berner, Emily Alesentzer, Peter Szolovits (2020). Baselines for chest x-ray report generation. Machine Learning for Health Workshop.

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Emily Alsentzer, Sarah-Blythe Ballard, Joan Neyra, Delphis M Vera, Victor B Osorio, Jose Quispe, David L Blazes, Luis Loayza (2020). Assessing 3 Outbreak Detection Algorithms in an Electronic Syndromic Surveillance System in a Resource-Limited Setting. Emerging infectious diseases.

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Emily Alsentzer, John R Murphy, Willie Boag, Wei-Hung Weng, Di Jin, Tristan Naumann, Matthew McDermott (2019). Publicly available clinical BERT embeddings. arXiv preprint arXiv:1904.03323.

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Albee Y Ling, Emily Alsentzer, Josephine Chen, Juan M Banda, Suzanne Tamang, Evan Minty (2018). Scalable Electronic Phenotyping For Studying Patient Comorbidities. AMIA Annual Symposium Proceedings.

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Yulin Hswen, Kara C Sewalk, Emily Alsentzer, Gaurav Tuli, John S Brownstein, Jared B Hawkins (2018). Investigating inequities in hospital care among lesbian, gay, bisexual, and transgender (LGBT) individuals using social media. Social Science & Medicine.

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Emily Alsentzer, Anne Kim (2018). Extractive Summarization of EHR Discharge Notes. arXiv preprint arXiv:1810.12085.

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Joshua S Lichtman, Emily Alsentzer, Mia Jaffe, Daniel Sprockett, Evan Masutani, Elvis Ikwa, Gabriela K Fragiadakis, David Clifford, Bevan Emma Huang, Justin L Sonnenburg, others (2016). The effect of microbial colonization on the host proteome varies by gastrointestinal location. The ISME journal.

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Emily Alsentzer, Delphis M Vera, Joan Neyra, Luis Loayza, Ricardo A Hora, Victor B Osorio, Jose Quispe, Sarah-Blythe Ballard, David Blazes (2015). Monitoring Acute Diarrhea via an Electronic Surveillance System in the Peruvian Navy. Online journal of public health informatics.

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Deepa Joshi, Emily Alsentzer, Kathryn Edwards, Allison Norton, Sarah Elizabeth Williams (2014). An algorithm developed using the Brighton Collaboration case definitions is more efficient for determining diagnostic certainty. Vaccine.

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Emily M Alsentzer, Jennifer M Noto, W Hayes McDonald, Richard M Peek Jr (2012). Identification of Novel Helicobacter pylori Adhesins that Bind the Host Cell Receptor Decay-Accelerating Factor (DAF).

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